Back again. The full story, I was blissfully unaware of any potential problem until my copper engine room towel drying rail came into contact with the alternator positive and engine room floor plate, ZZZAP.
Got meter out and eventually found the Eberspacher was the problem, disconnected the socket in the loom to this unit and diagnosis confirmed.
Rang Eberspacher who confirmed that the glow pin igniter was grounded to the case, they were looking into this but only from a galvanic point of view.
Eberspacher suggested that they could supply a rubber pipe to break the fuel line connection and made some suggestions as to how to isolate the exhaust.
The unit is mounted on non-conducting material
The high resistance of the plastic pipes and water therein was calculated as a negligable risk.
My own view is that I would prefer to keep the DC as it was, no connection to the hull anywhere and put up with the slight complication of charging the engine battery from the single alternator.
It would appear both systems have pros/cons regarding safety.